| Id: | ATAC-seq/ENCSR094QFZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR094QFZ [biosample_summary="Homo sapiens activated CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN627RPS|/analyses/ENCAN627RPS/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF250KLY|/files/ENCFF250KLY/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.86968. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF250KLY|/files/ENCFF250KLY/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR094QFZ | float |
ATAC-seq_ENCSR094QFZ |
ATAC-seq ENCSR094QFZ [biosample_summary="Homo sapiens activated CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"]
|
 |
[1.42, 40.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF267DDX.bed.gz | 2.75 MB | a48f381ff211b4a9194e4926f7ed8fd4 |
| ENCFF267DDX.bed.gz.dvc | 101.0 B | a705b42a1b03f6fec87b57e13c3b2f70 |
| ENCFF267DDX.tabix.bed.gz | 820.58 KB | 879da266e13d7beb4baa622514a7550f |
| ENCFF267DDX.tabix.bed.gz.dvc | 106.0 B | 05d49aa41c84dde192c946323bc4dc66 |
| ENCFF267DDX.tabix.bed.gz.tbi | 331.75 KB | a45256fb0ae3272d827af23612bd4602 |
| ENCFF267DDX.tabix.bed.gz.tbi.dvc | 110.0 B | 896b562bc200b7ea723a4e41f99d0602 |
| genomic_resource.yaml | 3.21 KB | a1017886e9211988010967836511fbd2 |
| genomic_resource_original.yaml | 2.97 KB | 55166ed45c2a4e200a503c2be1a0d90d |
| statistics/ |