Resource

Id ATAC-seq/ENCSR092SRScontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR092SRS [biosample_summary="Homo sapiens activated T-cell male adult (42 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours"]
Description
Labels
  • accession: ENCSR092SRS
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000537/
  • biosample_summary: Homo sapiens activated T-cell male adult (42 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours
  • date_created: 2021-01-22T21:00:20.280879+00:00
  • date_released: 2021-06-24
  • doi: 10.17989/ENCSR092SRS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR092SRS float

ATAC-seq_ENCSR092SRS
ATAC-seq ENCSR092SRS [biosample_summary="Homo sapiens activated T-cell male adult (42 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR092SRS [1.4, 39.7]
n
43,025,964
mean
8.09
sd
4.14

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 430259641.34% 71958
chr1 4295465 1.73% 7057
chr2 3393359 1.40% 5804
chr3 2614115 1.32% 4467
chr4 1638025 0.86% 2761
chr5 2085233 1.15% 3572
chr6 2681178 1.57% 4566
chr7 2107207 1.32% 3536
chr8 1787638 1.23% 3073
chr9 1678202 1.21% 2811
chr10 2044144 1.53% 3468
chr11 2077352 1.54% 3463
chr12 2165570 1.62% 3599
chr13 992217 0.87% 1727
chr14 1480781 1.38% 2488
chr15 1438265 1.41% 2446
chr16 1586458 1.76% 2536
chr17 2278893 2.74% 3666
chr18 757535 0.94% 1332
chr19 1971767 3.36% 3082
chr20 1133257 1.76% 1924
chr21 588696 1.26% 964
chr22 959058 1.89% 1536
chrX 1197762 0.77% 1946
chrY 73787 0.13% 134
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 71958 150 2903 597.93 501
global segment-length histogram

Files

Filename Size md5
ENCFF570EVR.bed.gz 2.98 MB be19e3a93af55e12d28b1101f52ad73d
ENCFF570EVR.tabix.bed.gz 820.24 KB efab3887146970569a27daac685c1c8f
ENCFF570EVR.tabix.bed.gz.tbi 324.11 KB 228f865ba16b40d907c0a60c5c449eb6
genomic_resource.yaml 2.26 KB d21156dcb328c8f52b99854416d3e085
statistics/