Resource

Id ATAC-seq/ENCSR084FHKcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR084FHK [biosample_summary="Homo sapiens GM18505"]
Description
Labels
  • accession: ENCSR084FHK
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005332/
  • biosample_summary: Homo sapiens GM18505
  • date_created: 2020-11-24T22:02:44.039825+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR084FHK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR084FHK float

ATAC-seq_ENCSR084FHK
ATAC-seq ENCSR084FHK [biosample_summary="Homo sapiens GM18505"]
 HISTOGRAM FOR ATAC-seq_ENCSR084FHK [1.33, 42.6]
n
52,042,162
mean
6.82
sd
3.25

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 520421621.62% 95256
chr1 4555073 1.83% 8156
chr2 4450799 1.84% 8398
chr3 3663744 1.85% 7010
chr4 3047230 1.60% 5933
chr5 3193771 1.76% 6069
chr6 3491216 2.04% 6471
chr7 2899885 1.82% 5436
chr8 2599524 1.79% 4939
chr9 2037502 1.47% 3705
chr10 2463025 1.84% 4563
chr11 2471834 1.83% 4491
chr12 2552621 1.92% 4635
chr13 1440652 1.26% 2723
chr14 1573135 1.47% 2798
chr15 1416289 1.39% 2510
chr16 1486955 1.65% 2464
chr17 1810490 2.17% 2959
chr18 1184600 1.47% 2258
chr19 1541702 2.63% 2307
chr20 1127502 1.75% 2017
chr21 535070 1.15% 935
chr22 678272 1.33% 1045
chrX 1820929 1.17% 3433
chrY 342 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 95256 150 3149 546.34 451
global segment-length histogram

Files

Filename Size md5
ENCFF376BWJ.bed.gz 3.7 MB f445c00d43251df052d2e46ffa92fcfd
ENCFF376BWJ.tabix.bed.gz 1.04 MB 03ec23dee644c10fd167a371e2f86d26
ENCFF376BWJ.tabix.bed.gz.tbi 436.41 KB 724bb25acab96e0d9394a85f15e2f282
genomic_resource.yaml 1.28 KB cf702c13ebe021af4224041dbb19b6f4
statistics/