Resource
| Id | ATAC-seq/ENCSR074WMH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR074WMH [biosample_summary="Homo sapiens Right ventricle myocardium superior tissue male adult (60 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (60 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN434WZH|/analyses/ENCAN434WZH/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN434WZH|/analyses/ENCAN434WZH/} has in progress subobject document {169ace4d-79bf-4c31-bb69-3967d5d3d4ba|/documents/169ace4d-79bf-4c31-bb69-3967d5d3d4ba/} audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF021WRY|/files/ENCFF021WRY/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.693913. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF021WRY|/files/ENCFF021WRY/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.72. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR074WMH | float |
ATAC-seq_ENCSR074WMH |
ATAC-seq ENCSR074WMH [biosample_summary="Homo sapiens Right ventricle myocardium superior tissue male adult (60 years)"]
|
 |
[1.33, 35.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 86200170 | 2.68% | 155074 |
| chr1 | 8406702 | 3.38% | 14891 |
| chr2 | 7015301 | 2.90% | 12776 |
| chr3 | 5749479 | 2.90% | 10682 |
| chr4 | 3770892 | 1.98% | 7096 |
| chr5 | 4712545 | 2.60% | 8721 |
| chr6 | 4926379 | 2.88% | 9205 |
| chr7 | 4397906 | 2.76% | 8058 |
| chr8 | 3848084 | 2.65% | 7141 |
| chr9 | 3779769 | 2.73% | 6713 |
| chr10 | 4416207 | 3.30% | 8090 |
| chr11 | 4404572 | 3.26% | 7791 |
| chr12 | 4091004 | 3.07% | 7368 |
| chr13 | 2188125 | 1.91% | 4097 |
| chr14 | 2600066 | 2.43% | 4659 |
| chr15 | 3115174 | 3.05% | 5563 |
| chr16 | 2979513 | 3.30% | 5059 |
| chr17 | 3869585 | 4.65% | 6407 |
| chr18 | 1860301 | 2.31% | 3565 |
| chr19 | 2921235 | 4.98% | 4517 |
| chr20 | 2310779 | 3.59% | 4116 |
| chr21 | 1090645 | 2.33% | 1953 |
| chr22 | 1849627 | 3.64% | 3138 |
| chrX | 1774104 | 1.14% | 3222 |
| chrY | 122176 | 0.21% | 246 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 155074 | 150 | 3599 | 555.86 | 440 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF712BJW.bed.gz | 6.02 MB | a268f6cb5adc9c99262fc4d42f88b055 |
| ENCFF712BJW.tabix.bed.gz | 1.69 MB | f68734d8a72a3a489196b720cb56f371 |
| ENCFF712BJW.tabix.bed.gz.tbi | 488.82 KB | da927d0bc3b8a1c16b3da09589edfca6 |
| genomic_resource.yaml | 2.86 KB | 416e850214df9cd29680c429b5cfb1c6 |
| statistics/ |