ATAC-seq_ENCSR074WMH
ATAC-seq ENCSR074WMH [biosample_summary="Homo sapiens Right ventricle myocardium superior tissue male adult (60 years)"]
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| Id: | ATAC-seq/ENCSR074WMH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR074WMH [biosample_summary="Homo sapiens Right ventricle myocardium superior tissue male adult (60 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (60 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN434WZH|/analyses/ENCAN434WZH/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN434WZH|/analyses/ENCAN434WZH/} has in progress subobject document {169ace4d-79bf-4c31-bb69-3967d5d3d4ba|/documents/169ace4d-79bf-4c31-bb69-3967d5d3d4ba/} audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF021WRY|/files/ENCFF021WRY/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.693913. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF021WRY|/files/ENCFF021WRY/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.72. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR074WMH | float |
ATAC-seq_ENCSR074WMH |
ATAC-seq ENCSR074WMH [biosample_summary="Homo sapiens Right ventricle myocardium superior tissue male adult (60 years)"]
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[1.33, 35.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF712BJW.bed.gz | 6.02 MB | a268f6cb5adc9c99262fc4d42f88b055 |
| ENCFF712BJW.bed.gz.dvc | 101.0 B | f0c50ef374356f006753231c9d4a8a7b |
| ENCFF712BJW.tabix.bed.gz | 1.69 MB | f68734d8a72a3a489196b720cb56f371 |
| ENCFF712BJW.tabix.bed.gz.dvc | 107.0 B | 1e9115760ed6f1d4ea93d15f2eb3891e |
| ENCFF712BJW.tabix.bed.gz.tbi | 488.82 KB | da927d0bc3b8a1c16b3da09589edfca6 |
| ENCFF712BJW.tabix.bed.gz.tbi.dvc | 110.0 B | 89183eb8b68dabdabf0dbf756b093d0c |
| genomic_resource.yaml | 2.86 KB | 416e850214df9cd29680c429b5cfb1c6 |
| genomic_resource_original.yaml | 2.73 KB | f95c8ad2f2679ef4072b7e4af285f891 |
| statistics/ |