ATAC-seq_ENCSR072UYN
ATAC-seq ENCSR072UYN [biosample_summary="Homo sapiens sciatic nerve tissue female child (16 years)"]
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| Id: | ATAC-seq/ENCSR072UYN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR072UYN [biosample_summary="Homo sapiens sciatic nerve tissue female child (16 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female child (16 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN770HXE|/analyses/ENCAN770HXE/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN770HXE|/analyses/ENCAN770HXE/} has in progress subobject document {99907ca1-e9fc-4ddd-a628-0c3a70bcaa6d|/documents/99907ca1-e9fc-4ddd-a628-0c3a70bcaa6d/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF996DYK|/files/ENCFF996DYK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.870725. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF996DYK|/files/ENCFF996DYK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR072UYN | float |
ATAC-seq_ENCSR072UYN |
ATAC-seq ENCSR072UYN [biosample_summary="Homo sapiens sciatic nerve tissue female child (16 years)"]
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[1.27, 30.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF436AWP.bed.gz | 5.74 MB | 6b30a2179db915923b18bb314b1cd50a |
| ENCFF436AWP.bed.gz.dvc | 101.0 B | 5cc57d348e0573e610b9703d531f24bc |
| ENCFF436AWP.tabix.bed.gz | 1.56 MB | 4d97b1df181e597417f0d57fad3089ad |
| ENCFF436AWP.tabix.bed.gz.dvc | 107.0 B | 49496d3388d1d15d1a4bb9c456fc4665 |
| ENCFF436AWP.tabix.bed.gz.tbi | 478.1 KB | 9fb8d3bd57364a6f8f146489a56d0481 |
| ENCFF436AWP.tabix.bed.gz.tbi.dvc | 110.0 B | 8daecdbbb1299a9cbd8ef6c0cec01950 |
| genomic_resource.yaml | 2.79 KB | 94fc629e7806c7c8981394e728e58da7 |
| genomic_resource_original.yaml | 2.69 KB | a0fb0a6fc1ee6a4f616d35d3cdcfde72 |
| statistics/ |