ATAC-seq_ENCSR065CER
ATAC-seq ENCSR065CER [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"]
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| Id: | ATAC-seq/ENCSR065CER |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR065CER [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (49 years) with amyotrophic lateral sclerosis output_type: replicated peaks audit_internal_action: Released analysis {ENCAN739IWP|/analyses/ENCAN739IWP/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF199OKA|/files/ENCFF199OKA/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.78308. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF199OKA|/files/ENCFF199OKA/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.80. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF896PIT|/files/ENCFF896PIT/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.762309. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF896PIT|/files/ENCFF896PIT/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.78. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR065CER | float |
ATAC-seq_ENCSR065CER |
ATAC-seq ENCSR065CER [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"]
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[1.24, 41.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF974XTQ.bed.gz | 5.39 MB | a015fc7f7e4defa835a2827b30903291 |
| ENCFF974XTQ.bed.gz.dvc | 101.0 B | 781dfedb22119a7b075181319eb5b7c1 |
| ENCFF974XTQ.tabix.bed.gz | 1.49 MB | 0b7f35f46f5b8b317a607c499dc75cdf |
| ENCFF974XTQ.tabix.bed.gz.dvc | 107.0 B | a6b31eae559444a3782f50e14227277b |
| ENCFF974XTQ.tabix.bed.gz.tbi | 521.76 KB | de4d68bc7f1a0b01760fa9e5b7fb48d0 |
| ENCFF974XTQ.tabix.bed.gz.tbi.dvc | 110.0 B | e614412753b35fd806a268adf16b5331 |
| genomic_resource.yaml | 3.87 KB | bdc2e4297da08da7a0cfb1c57db6dfa5 |
| genomic_resource_original.yaml | 3.75 KB | 9ef245185b333940bb9ef5629c692e0a |
| statistics/ |