ATAC-seq_ENCSR062SVK
ATAC-seq ENCSR062SVK [biosample_summary="Homo sapiens right atrium auricular region tissue female adult (51 years)"]
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| Id: | ATAC-seq/ENCSR062SVK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR062SVK [biosample_summary="Homo sapiens right atrium auricular region tissue female adult (51 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN905NGK|/analyses/ENCAN905NGK/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN905NGK|/analyses/ENCAN905NGK/} has in progress subobject document {f8476621-0eb6-4171-85f0-d9ba2054bbc7|/documents/f8476621-0eb6-4171-85f0-d9ba2054bbc7/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF705YSI|/files/ENCFF705YSI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.05. audit_not_compliant: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF705YSI|/files/ENCFF705YSI/} (overlap peaks) and {ENCFF675UHQ|/files/ENCFF675UHQ/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 73431 and 25006 peaks. audit_warning: Transcription Start Site (TSS) enrichment values for alignments to the human genome GRCh38 are concerning when < 5, acceptable between 5 and 7, and ideal when > 7. ENCODE processed file {ENCFF122ENK|/files/ENCFF122ENK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a TSS enrichment value of 6.658336425673424. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR062SVK | float |
ATAC-seq_ENCSR062SVK |
ATAC-seq ENCSR062SVK [biosample_summary="Homo sapiens right atrium auricular region tissue female adult (51 years)"]
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[1.77, 16.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF705YSI.bed.gz | 1.62 MB | 03a3c18e95188ee582d38955f672aa30 |
| ENCFF705YSI.bed.gz.dvc | 101.0 B | 7cd16b089c58d8eb0ea747f92bda9ee5 |
| ENCFF705YSI.tabix.bed.gz | 543.53 KB | 3adacd339cf674a17c65b0eb15fcd2b7 |
| ENCFF705YSI.tabix.bed.gz.dvc | 106.0 B | 7a4652df5272d941a7da1dd4501b5bf5 |
| ENCFF705YSI.tabix.bed.gz.tbi | 318.15 KB | 5bdbc0b4c2baf39b07ceaf77097a9d0c |
| ENCFF705YSI.tabix.bed.gz.tbi.dvc | 110.0 B | 88cde12703c2d6426ce0e7ea254c73eb |
| genomic_resource.yaml | 3.0 KB | 48b64a29638167300169f11a9a403292 |
| genomic_resource_original.yaml | 2.88 KB | 9966e3af15071bfebade6dcaf23440d4 |
| statistics/ |