Resource

Id ATAC-seq/ENCSR053SGPcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR053SGP [biosample_summary="Homo sapiens heart right ventricle tissue male adult (54 years)"]
Description
Labels
  • accession: ENCSR053SGP
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002080/
  • biosample_summary: Homo sapiens heart right ventricle tissue male adult (54 years)
  • date_created: 2019-07-30T07:25:29.852408+00:00
  • date_released: 2020-10-08
  • doi: 10.17989/ENCSR053SGP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR053SGP float

ATAC-seq_ENCSR053SGP
ATAC-seq ENCSR053SGP [biosample_summary="Homo sapiens heart right ventricle tissue male adult (54 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR053SGP [1.36, 35.7]
n
59,954,858
mean
5.35
sd
2.71

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 599548581.86% 112769
chr1 5841975 2.35% 10883
chr2 4725751 1.95% 9045
chr3 3810567 1.92% 7351
chr4 2488092 1.31% 4823
chr5 3180617 1.75% 6093
chr6 3313246 1.94% 6331
chr7 2981673 1.87% 5728
chr8 2663022 1.83% 5154
chr9 2620751 1.89% 4881
chr10 3085786 2.31% 5876
chr11 3199335 2.37% 5894
chr12 2873228 2.16% 5318
chr13 1446781 1.27% 2846
chr14 1865299 1.74% 3467
chr15 2117778 2.08% 3985
chr16 2222127 2.46% 4088
chr17 2876968 3.46% 5179
chr18 1275298 1.59% 2557
chr19 2282955 3.89% 3796
chr20 1682409 2.61% 3198
chr21 771650 1.65% 1457
chr22 1371444 2.70% 2548
chrX 1194121 0.77% 2134
chrY 63985 0.11% 137
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 112769 150 2926 531.66 443
global segment-length histogram

Files

Filename Size md5
ENCFF228DZX.bed.gz 4.31 MB 2e207a1cf67d45b055714d0bc8e57c34
ENCFF228DZX.tabix.bed.gz 1.24 MB 29697a7161f572fbeb342f00d7565258
ENCFF228DZX.tabix.bed.gz.tbi 440.02 KB 2d767d77046b2274265daa8fbe836f3c
genomic_resource.yaml 1.65 KB 9ce0a34f4a3e492f1c7472407cffc4c0
statistics/