Resource
| Id | ATAC-seq/ENCSR044ATC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR044ATC [biosample_summary="Homo sapiens natural killer cell female adult (41 years)"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (41 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN759OQI|/analyses/ENCAN759OQI/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF498XUR|/files/ENCFF498XUR/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.811477. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF498XUR|/files/ENCFF498XUR/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF298ZOA|/files/ENCFF298ZOA/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.80248. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF298ZOA|/files/ENCFF298ZOA/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.83. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR044ATC | float |
ATAC-seq_ENCSR044ATC |
ATAC-seq ENCSR044ATC [biosample_summary="Homo sapiens natural killer cell female adult (41 years)"]
|
 |
[1.21, 49.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 46666867 | 1.45% | 81838 |
| chr1 | 4638511 | 1.86% | 7985 |
| chr2 | 3553159 | 1.47% | 6397 |
| chr3 | 2731002 | 1.38% | 4916 |
| chr4 | 1746373 | 0.92% | 3139 |
| chr5 | 2234520 | 1.23% | 4040 |
| chr6 | 2705562 | 1.58% | 4798 |
| chr7 | 2375750 | 1.49% | 4224 |
| chr8 | 1790360 | 1.23% | 3213 |
| chr9 | 1888386 | 1.36% | 3333 |
| chr10 | 2178262 | 1.63% | 3898 |
| chr11 | 2315509 | 1.71% | 3983 |
| chr12 | 2252911 | 1.69% | 3938 |
| chr13 | 1046971 | 0.92% | 1887 |
| chr14 | 1582563 | 1.48% | 2808 |
| chr15 | 1601796 | 1.57% | 2857 |
| chr16 | 1812906 | 2.01% | 3039 |
| chr17 | 2531522 | 3.04% | 4200 |
| chr18 | 876971 | 1.09% | 1630 |
| chr19 | 2345787 | 4.00% | 3770 |
| chr20 | 1293068 | 2.01% | 2323 |
| chr21 | 626613 | 1.34% | 1085 |
| chr22 | 1092676 | 2.15% | 1820 |
| chrX | 1444203 | 0.93% | 2551 |
| chrY | 1486 | <0.01% | 4 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 81838 | 150 | 3224 | 570.23 | 482 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF063YVQ.bed.gz | 3.35 MB | f01b3662f65a6c767fac13806c864b41 |
| ENCFF063YVQ.tabix.bed.gz | 934.78 KB | 9d37c69a349066ed1ac6370415800abd |
| ENCFF063YVQ.tabix.bed.gz.tbi | 357.26 KB | 24017d4aa87bd2589caf1887d94a2089 |
| genomic_resource.yaml | 3.74 KB | cfa6e0f0145b694a95cd8630f0123018 |
| statistics/ |