ATAC-seq_ENCSR044ATC
ATAC-seq ENCSR044ATC [biosample_summary="Homo sapiens natural killer cell female adult (41 years)"]
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| Id: | ATAC-seq/ENCSR044ATC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR044ATC [biosample_summary="Homo sapiens natural killer cell female adult (41 years)"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (41 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN759OQI|/analyses/ENCAN759OQI/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF498XUR|/files/ENCFF498XUR/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.811477. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF498XUR|/files/ENCFF498XUR/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF298ZOA|/files/ENCFF298ZOA/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.80248. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF298ZOA|/files/ENCFF298ZOA/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.83. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR044ATC | float |
ATAC-seq_ENCSR044ATC |
ATAC-seq ENCSR044ATC [biosample_summary="Homo sapiens natural killer cell female adult (41 years)"]
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[1.21, 49.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF063YVQ.bed.gz | 3.35 MB | f01b3662f65a6c767fac13806c864b41 |
| ENCFF063YVQ.bed.gz.dvc | 101.0 B | e660a400b196d2417d27347f18c8b012 |
| ENCFF063YVQ.tabix.bed.gz | 934.78 KB | 9d37c69a349066ed1ac6370415800abd |
| ENCFF063YVQ.tabix.bed.gz.dvc | 106.0 B | 8900fd217400b29df21651b1b6435f96 |
| ENCFF063YVQ.tabix.bed.gz.tbi | 357.26 KB | 24017d4aa87bd2589caf1887d94a2089 |
| ENCFF063YVQ.tabix.bed.gz.tbi.dvc | 110.0 B | 39009d7934f2fd4831a168a15875786f |
| genomic_resource.yaml | 3.74 KB | cfa6e0f0145b694a95cd8630f0123018 |
| genomic_resource_original.yaml | 3.64 KB | dda1ab92460f180d4d1cde6348102b93 |
| statistics/ |