ATAC-seq_ENCSR042AWH
ATAC-seq ENCSR042AWH [biosample_summary="Homo sapiens HepG2"]
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| Id: | ATAC-seq/ENCSR042AWH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR042AWH [biosample_summary="Homo sapiens HepG2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN074ZCE|/analyses/ENCAN074ZCE/} has in progress subobject document {23706428-f8ac-4cfe-a00a-75c4fc032407|/documents/23706428-f8ac-4cfe-a00a-75c4fc032407/} audit_internal_action: Released analysis {ENCAN074ZCE|/analyses/ENCAN074ZCE/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: Alignment file {ENCFF239RGZ|/files/ENCFF239RGZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 23501715 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: Alignment file {ENCFF394BBD|/files/ENCFF394BBD/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 23241010 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF239RGZ|/files/ENCFF239RGZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.80483. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF239RGZ|/files/ENCFF239RGZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.82. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF394BBD|/files/ENCFF394BBD/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.809794. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF394BBD|/files/ENCFF394BBD/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.82. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR042AWH | float |
ATAC-seq_ENCSR042AWH |
ATAC-seq ENCSR042AWH [biosample_summary="Homo sapiens HepG2"]
|
|
[1.42, 42.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF913MQB.bed.gz | 5.05 MB | 30b74a5eef3e616fe2a0ae4ee88481b2 |
| ENCFF913MQB.bed.gz.dvc | 101.0 B | 11c341dc9067333b492bde0a722c4dab |
| ENCFF913MQB.tabix.bed.gz | 1.39 MB | cfb118a612f4797962b454f18e979fff |
| ENCFF913MQB.tabix.bed.gz.dvc | 107.0 B | 3a5c783838480541e2ba2c61347c597a |
| ENCFF913MQB.tabix.bed.gz.tbi | 479.58 KB | 69b5eda99870620182454c755839e458 |
| ENCFF913MQB.tabix.bed.gz.tbi.dvc | 110.0 B | 2fa9f17450c2d945400da5d217d0dcf8 |
| genomic_resource.yaml | 4.65 KB | df6f997f6c467a0bcbec6e4181a638f2 |
| genomic_resource_original.yaml | 4.58 KB | 3b27b71befb4da5d344ac0c59e140148 |
| statistics/ |