Resource

Id ATAC-seq/ENCSR040PBNcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR040PBN [biosample_summary="Homo sapiens HG03066"]
Description
Labels
  • accession: ENCSR040PBN
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0010865/
  • biosample_summary: Homo sapiens HG03066
  • date_created: 2020-11-24T22:02:41.851150+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR040PBN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR040PBN float

ATAC-seq_ENCSR040PBN
ATAC-seq ENCSR040PBN [biosample_summary="Homo sapiens HG03066"]
 HISTOGRAM FOR ATAC-seq_ENCSR040PBN [1.54, 36.8]
n
49,639,015
mean
7.38
sd
3.44

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 496390151.54% 93037
chr1 4488057 1.80% 8262
chr2 4329788 1.79% 8304
chr3 3584255 1.81% 6898
chr4 2917860 1.53% 5720
chr5 3027699 1.67% 5804
chr6 3412302 2.00% 6489
chr7 2793372 1.75% 5293
chr8 2459243 1.69% 4760
chr9 1943125 1.40% 3674
chr10 2400782 1.79% 4512
chr11 2373960 1.76% 4393
chr12 2471611 1.85% 4550
chr13 1403363 1.23% 2682
chr14 1551753 1.45% 2821
chr15 1379972 1.35% 2525
chr16 1360263 1.51% 2387
chr17 1632974 1.96% 2857
chr18 1108713 1.38% 2166
chr19 1237078 2.11% 2000
chr20 1000000 1.55% 1899
chr21 458992 0.98% 843
chr22 599945 1.18% 1039
chrX 1585997 1.02% 2909
chrY 117911 0.21% 250
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 93037 150 2837 533.54 440
global segment-length histogram

Files

Filename Size md5
ENCFF359CMH.bed.gz 3.52 MB c849f77b1513b438cbe92d053536262a
ENCFF359CMH.tabix.bed.gz 1.01 MB 6dbc97b6e848e82942deb3ae41389dab
ENCFF359CMH.tabix.bed.gz.tbi 430.17 KB 5ce2d2ee71ee24e4f1e372640c119b13
genomic_resource.yaml 1.66 KB ae5b3ee0541c5a0fd01f2be931d7ebf3
statistics/