Resource

Id ATAC-seq/ENCSR038WVVcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR038WVV [biosample_summary="Homo sapiens HG02973"]
Description
Labels
  • accession: ENCSR038WVV
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0010858/
  • biosample_summary: Homo sapiens HG02973
  • date_created: 2020-11-24T22:02:32.994134+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR038WVV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR038WVV float

ATAC-seq_ENCSR038WVV
ATAC-seq ENCSR038WVV [biosample_summary="Homo sapiens HG02973"]
 HISTOGRAM FOR ATAC-seq_ENCSR038WVV [1.47, 45.6]
n
50,261,883
mean
6.82
sd
3.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 502618831.56% 97292
chr1 4613725 1.85% 8833
chr2 4348125 1.80% 8656
chr3 3573597 1.80% 7202
chr4 2961175 1.56% 6077
chr5 3090892 1.70% 6165
chr6 3448114 2.02% 6737
chr7 2808044 1.76% 5553
chr8 2504498 1.73% 5018
chr9 1989695 1.44% 3821
chr10 2382566 1.78% 4653
chr11 2376591 1.76% 4583
chr12 2523745 1.89% 4865
chr13 1367273 1.20% 2705
chr14 1528410 1.43% 2881
chr15 1401068 1.37% 2633
chr16 1385280 1.53% 2413
chr17 1726310 2.07% 3033
chr18 1129295 1.41% 2282
chr19 1399543 2.39% 2240
chr20 1009257 1.57% 1942
chr21 457134 0.98% 821
chr22 633788 1.25% 1073
chrX 1515987 0.97% 2921
chrY 87771 0.15% 185
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 97292 150 2931 516.61 424
global segment-length histogram

Files

Filename Size md5
ENCFF505XMS.bed.gz 3.62 MB f972f1c89c05791c159549efa8257990
ENCFF505XMS.tabix.bed.gz 1.06 MB 64d7bb943b5533a2e2a99c0aba04a802
ENCFF505XMS.tabix.bed.gz.tbi 439.72 KB 0f5c0782ed157a10479e51152c90b9c5
genomic_resource.yaml 1.82 KB 4954669d46ac1779a9b0dec33c638d52
statistics/