ATAC-seq_ENCSR025MEO
ATAC-seq ENCSR025MEO [biosample_summary="Homo sapiens HG03354"]
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| Id: | ATAC-seq/ENCSR025MEO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR025MEO [biosample_summary="Homo sapiens HG03354"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN363NRV|/analyses/ENCAN363NRV/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF132WNX|/files/ENCFF132WNX/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.693678. audit_not_compliant: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF132WNX|/files/ENCFF132WNX/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.68. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed file {ENCFF132WNX|/files/ENCFF132WNX/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC2 value of 2.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR025MEO | float |
ATAC-seq_ENCSR025MEO |
ATAC-seq ENCSR025MEO [biosample_summary="Homo sapiens HG03354"]
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[1.4, 37.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF429JRQ.bed.gz | 4.76 MB | 016b55eeedcb018e18ec3bfffc0b97d8 |
| ENCFF429JRQ.bed.gz.dvc | 101.0 B | 3fca6aff8a12f81663f165446d009a61 |
| ENCFF429JRQ.tabix.bed.gz | 1.26 MB | fc7b44e6df533421a1df2e6f2e39e9f9 |
| ENCFF429JRQ.tabix.bed.gz.dvc | 107.0 B | a049d8edde0161192869ccd5f677847e |
| ENCFF429JRQ.tabix.bed.gz.tbi | 475.03 KB | b9fcf3db428138eb4c0e155042a2f0e3 |
| ENCFF429JRQ.tabix.bed.gz.tbi.dvc | 110.0 B | 5af25856dc3719900415a714c79a8e53 |
| genomic_resource.yaml | 3.13 KB | a1570d22f4d9d4a37173829aea0fbc7e |
| genomic_resource_original.yaml | 3.06 KB | 80646f36cf3715473475714c20a1ffaf |
| statistics/ |