Resource

Id ATAC-seq/ENCSR024WODcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR024WOD [biosample_summary="Homo sapiens GM21390"]
Description
Labels
  • accession: ENCSR024WOD
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_CLO_0015884/
  • biosample_summary: Homo sapiens GM21390
  • date_created: 2020-11-24T22:02:39.769842+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR024WOD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR024WOD float

ATAC-seq_ENCSR024WOD
ATAC-seq ENCSR024WOD [biosample_summary="Homo sapiens GM21390"]
 HISTOGRAM FOR ATAC-seq_ENCSR024WOD [1.43, 41.9]
n
57,196,279
mean
6.96
sd
3.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 571962791.78% 107236
chr1 5175351 2.08% 9559
chr2 5074995 2.10% 9719
chr3 4168370 2.10% 8004
chr4 3538858 1.86% 6946
chr5 3613308 1.99% 6924
chr6 3914235 2.29% 7381
chr7 3239981 2.03% 6215
chr8 2965662 2.04% 5706
chr9 2280047 1.65% 4288
chr10 2723181 2.04% 5111
chr11 2728117 2.02% 5053
chr12 2865397 2.15% 5336
chr13 1638932 1.43% 3148
chr14 1689318 1.58% 3106
chr15 1553750 1.52% 2869
chr16 1506379 1.67% 2637
chr17 1747407 2.10% 3018
chr18 1323368 1.65% 2546
chr19 1297619 2.21% 2048
chr20 1134474 1.76% 2117
chr21 504415 1.08% 900
chr22 617409 1.21% 1035
chrX 1775752 1.14% 3332
chrY 119954 0.21% 238
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 107236 150 2602 533.37 446
global segment-length histogram

Files

Filename Size md5
ENCFF482YHK.bed.gz 4.15 MB 0f69061fffcff880e65f8b95d1919533
ENCFF482YHK.tabix.bed.gz 1.17 MB 3b8db65c5e8c70f57d3214ddae0d24df
ENCFF482YHK.tabix.bed.gz.tbi 460.69 KB 1d368874f513fa895123f003228e76c6
genomic_resource.yaml 1.28 KB 62b14d25259a5bc1a95ce9e9108e392f
statistics/