Resource
| Id | ATAC-seq/ENCSR011NJP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR011NJP [biosample_summary="Homo sapiens GM18858"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN772CBT|/analyses/ENCAN772CBT/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR011NJP | float |
ATAC-seq_ENCSR011NJP |
ATAC-seq ENCSR011NJP [biosample_summary="Homo sapiens GM18858"]
|
![]() |
[1.65, 39.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 51418101 | 1.60% | 108984 |
| chr1 | 4271145 | 1.72% | 8942 |
| chr2 | 4570489 | 1.89% | 9886 |
| chr3 | 3843619 | 1.94% | 8332 |
| chr4 | 3475652 | 1.83% | 7610 |
| chr5 | 3305523 | 1.82% | 7142 |
| chr6 | 3558212 | 2.08% | 7552 |
| chr7 | 2977595 | 1.87% | 6352 |
| chr8 | 2693983 | 1.86% | 5822 |
| chr9 | 1996047 | 1.44% | 4219 |
| chr10 | 2436756 | 1.82% | 5180 |
| chr11 | 2334178 | 1.73% | 4944 |
| chr12 | 2508850 | 1.88% | 5268 |
| chr13 | 1630392 | 1.43% | 3532 |
| chr14 | 1528809 | 1.43% | 3164 |
| chr15 | 1280700 | 1.26% | 2647 |
| chr16 | 1289772 | 1.43% | 2569 |
| chr17 | 1427141 | 1.71% | 2811 |
| chr18 | 1310138 | 1.63% | 2874 |
| chr19 | 1099152 | 1.88% | 1953 |
| chr20 | 970069 | 1.51% | 2049 |
| chr21 | 496040 | 1.06% | 1004 |
| chr22 | 507004 | 1.00% | 963 |
| chrX | 1906366 | 1.22% | 4168 |
| chrY | 469 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 108984 | 150 | 2618 | 471.79 | 404 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF824HVH.bed.gz | 3.66 MB | 8777b7eb85134886001123a8df6b6a69 |
| ENCFF824HVH.tabix.bed.gz | 1.18 MB | 00a20d4ba4be531aa4eddb6eeaa0b123 |
| ENCFF824HVH.tabix.bed.gz.tbi | 483.12 KB | 4b03c69040719cb578d12d6d7f7a26e0 |
| genomic_resource.yaml | 1.28 KB | db50cc4c49ab8ed194646ddd91a3eaa8 |
| statistics/ |
