Resource

Id ATAC-seq/ENCSR011NJPcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR011NJP [biosample_summary="Homo sapiens GM18858"]
Description
Labels
  • accession: ENCSR011NJP
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_CLO_0026258/
  • biosample_summary: Homo sapiens GM18858
  • date_created: 2020-11-24T22:02:44.821326+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR011NJP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR011NJP float

ATAC-seq_ENCSR011NJP

ATAC-seq ENCSR011NJP [biosample_summary="Homo sapiens GM18858"]
HISTOGRAM FOR ATAC-seq_ENCSR011NJP [1.65, 39.9]
n
51,418,101
mean
7.64
sd
4.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 514181011.60% 108984
chr1 4271145 1.72% 8942
chr2 4570489 1.89% 9886
chr3 3843619 1.94% 8332
chr4 3475652 1.83% 7610
chr5 3305523 1.82% 7142
chr6 3558212 2.08% 7552
chr7 2977595 1.87% 6352
chr8 2693983 1.86% 5822
chr9 1996047 1.44% 4219
chr10 2436756 1.82% 5180
chr11 2334178 1.73% 4944
chr12 2508850 1.88% 5268
chr13 1630392 1.43% 3532
chr14 1528809 1.43% 3164
chr15 1280700 1.26% 2647
chr16 1289772 1.43% 2569
chr17 1427141 1.71% 2811
chr18 1310138 1.63% 2874
chr19 1099152 1.88% 1953
chr20 970069 1.51% 2049
chr21 496040 1.06% 1004
chr22 507004 1.00% 963
chrX 1906366 1.22% 4168
chrY 469 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 108984 150 2618 471.79 404
global segment-length histogram

Files

Filename Size md5
ENCFF824HVH.bed.gz 3.66 MB 8777b7eb85134886001123a8df6b6a69
ENCFF824HVH.tabix.bed.gz 1.18 MB 00a20d4ba4be531aa4eddb6eeaa0b123
ENCFF824HVH.tabix.bed.gz.tbi 483.12 KB 4b03c69040719cb578d12d6d7f7a26e0
genomic_resource.yaml 1.28 KB db50cc4c49ab8ed194646ddd91a3eaa8
statistics/